Runa Bhaumik, Vineet Srivastava, Arash Jalali, Shanta Ghosh, Ranganathan Chandrasekharan, MindWatch: A Smart Cloud-based AI solution for Suicide Ideation Detection leveraging Large Language Models, medRxiv preprint doi: https://doi.org/10.1101/2023.09.25.23296062

Bhaumik R, Stange J (2023) Utilizing Random Effects Machine Learning Algorithms for Identifying Vulnerability to Depression. J Dep Anxiety. DOI: 10.35248/2167-1044.23.12.516 Mehta, S. D., Agingu, W., Zulaika, G., Nyothach, E., Bhaumik, R., Green, S. J., van Eijk, A. M., Otieno, F. O., Phillips Howard, P. A., & Schneider, J. (2023). Vaginal Microbial Network Analysis Reveals Novel Taxa Relationships among Adolescent and Young Women with Incident Sexually Transmitted Infection Compared with Those Remaining Persistently Negative over a 30-Month Period. Microorganisms, 11(8), 2035. https://doi.org/10.3390/microorganisms11082035

Rizavi HS, Khan OS, Zhang H, Bhaumik R, Grayson DR, Pandey GN. Methylation and expression of glucocorticoid receptor exon-1 variants and FKBP5 in teenage suicide-completers. Translation Psychiatry.   2023 Feb 13;13(1):53. doi: 10.1038/s41398-023-02345-1. PMID: 36781843.

Mehta, S. D., Zulaika, G., Agingu, W., Nyothach, E., Bhaumik, R., Green, S. J., van Eijk, A. M., Kwaro, D., Otieno, F., & Phillips-Howard, P. (2023). Analysis of bacterial vaginosis, the vaginal microbiome, and sexually transmitted infections following the provision of menstrual cups in Kenyan schools: Results of a nested study within a cluster randomized controlled trial. PLoS medicine, 20(7), e1004258. https://doi.org/10.1371/journal.pmed.1004258

Targum, S.D., Schappi, J., Koutsouris, A., Bhaumik, R., Rapport, M.H., Rasgon, N., Rasenick M.M:  A novel peripheral biomarker for depression and antidepressant response. Mol Psychiatry (2022). https://doi.org/10.1038/s41380-021-01399-1.

Zilliox MJ,  Foecking EM, Kuffel GR, Conneely M, Saban KL, Herrold AA, Kletzel SL, Radke JR, Walsh E, Guernon A, Pape A, Ripley DL, Patil V, Pacheco MS, Rosenow JM, Bhaumik R, Bhaumik D, Pape TLB. An Initial miRNA Profile of Persons With Persisting Neurobehavioral Impairments and States of Disordered Consciousness After Severe Traumatic Brain Injury. J Head Trauma Rehabil. 2022 Nov 4. doi: 10.1097/HTR.0000000000000821. Epub ahead of print. PMID: 36350037.

Johnson AK, Bhaumik R , Nandi D, Roy A, Mehta SD. Sexually Transmitted Disease-Related Reddit Posts During the COVID-19 Pandemic: Latent Dirichlet Allocation Analysis. J Med Internet Res. 2022 Oct 31;24(10): e37258. doi: 10.2196/37258. PMID: 36219757; PMCID: PMC9624277.

Klumpp H, Jimmy J, Burkhouse KL, Bhaumik R, Francis J, Craske MG, Phan KL, Ajilore O. Brain response to emotional faces in anxiety and depression: neural predictors of cognitive behavioral therapy outcome and predictor-based subgroups following therapy. Psychol Med. 2022 Aug;52(11):2095-2105. doi: 10.1017/S0033291720003979. Epub 2020 Nov 10. PMID: 33168110.

Johnson AK , Bhaumik R, Tabidze I, Mehta SD. Nowcasting sexually transmitted infections in Chicago: predictive modeling and evaluation study using Google trends. JMIR Public Health Surveill 2020;6(4): e20588. PMCID: PMC7677015

Frazier SL, Rusch D, Coxe S, Stout TJ, Helseth SA, Dirks MA, Bustamante EE, Atkins MS, Glisson C, Green PD, Bhaumik D, Bhaumik R. After-School Programs and Children's Mental Health: Organizational Social Context, Program Quality, and Children's Social Behavior. J Clin Child Adolesc Psychol. 2021 Mar-Apr;50(2):215-228. doi: 10.1080/15374416.2019.1683849. Epub 2020 Feb 14. PMID: 32058822.

Pandey GN, Rizavi HS, Bhaumik R, Zhang H. Chemokines gene expression in the prefrontal cortex of depressed suicide victims and normal control subjects. Brain Behav Immun. 2021 May;94:266-273. doi: 10.1016/j.bbi.2021.01.033. Epub 2021 Feb 9. PMID: 33571631; PMCID: PMC8231709.

Pape, TL., Rosenow, JM., Steiner, M., Parrish, T., Geurnon, A., Harton, B., Patil, V., Bhaumik, DK., McNamee, S., Walker, M., Froelich, K., Buress, C., Odle, C., Wang, X., Herrold, AA., Zhao, W., Reda, D., Mallinson, T., Conneely, M., Nemeth, AJ. “Placebo-Controlled Trial of Familiar Auditory Sensory Training for Acute Severe Traumatic Brain Injury: A Preliminary Report”. Neurorehabilitation and Neural Repair, DOI: 10.1177/1545968314543308, 2020.

Herrold, Amy A., Kletzel, Sandra L., Foecking, Eileen M., Saban, Karen L., Przyby- cien–Szymanska, Magdalena, MZ, Bhaumik, D., Lange, D., Radke, JR., Salinas, I., Bender P., Theresa L. “miRNA as Potential Biomarkers for TBI: Pathway from Diag- nosis to Neurorehabilitation. (Accepted)”, Journal of Head Trauma Rehabilitation, doi: 10.1097/HTR.0000000000000632, 2020.

Bender, Pape T., Livengood, S., Blabas, B., Kletzel, S., Guernon, A., Bhaumik, DK., Bhaumik, R., Mallinson, T., Weaver, J., Wang, X., Herrold, A., Rosenow, JM., Parrish, T., (2020) Treatment Induced Changes in Structural Connectivity occurring in Parallel with Neurobehavioral Recovery from Disordered Consciousness after TBI. Frontiers in Neurology, 11: 1027 (doi: 10.3389/fneur.2020.01027).

Mehta, SD., Nandi, D., Agingu, W., Green, SJ., Bhaumik, D.K., Bailey, RC., Otieno, F. “Vaginal and penile microbiome associations with HSV-2 in women and their male sex partners” J Infect Dis, doi:10.1093/infdis/jiaa52, 2020.

Mehta, SD., Zhao, D., Green, SJ., Agingu, W., Otieno, F., Bhaumik, R., Bhaumik, DK., Bailey, RC. “The microbiome composition of a man’s penis predicts incident Bac- terial vaginosis in his female sex partner with high accuracy” Front Cell Infect Microbi- ology,10:433. PMCID: PMC7438843, 2020.

Mehta, SD., Agingu, W., Nordgren, RK., Green, SJ., Bhaumik, DK., Bailey, RC., Otieno, F. “Characteristics of women and their male sex partners predict clinical patho- logic state among a prospective cohort of Kenyan women with non-optimal vaginal mi- crobiota” Sex Transm Dis, Doi:10.1097/ OLQ.0000000000001259, 2020.

Nordgren, RK., Mehta, SD., Bhaumik, DK. “Penalized Longitudinal Models to Iden- tify Penile and Vaginal Taxa in Relation to Bacterial Vaginosis, (submitted)” Biometrics, 2020.

Mehta, Supriya., Okal, Duncan., Otieno, Fredrick., Green, Stefan., Nordgren, Rachel., Huibner, Sanja., Bailey,Robert., Bhaumik, Dulal., Landay, Alan., Kaul, Rupert. “Schis- tosomiasis is associated with rectal mucosal inflammation among Kenyan men who have sex with men(submitted)” Journal of STD and AIDS, 2020.

Bhaumik, D. K., Jie, F., Nordgren, Bhaumik, R., and Bikas K. Sinha, B.K. “A mixed-effects model for detecting disrupted connectivities in heterogeneous data’.’ IEEE, Transactions in Medical Imaging, 2018.

Bhaumik, R., Pradhan A., Das, S., Bhaumik, D. K. “Predicting Autism Spectrum Disorder Using Domain-Adaptive Cross-Site Evaluation.” Neuroinformatics, 2018.

Fei Jie, Rawan A Rupnow, Dulal K Bhaumik, Runa Bhaumik, and Bikas K Sinha. “Analysis of Functional Connectivity Data by Hierarchical Bayesian Models and Ap- plications in Autism Study.” International Journal of Statistical Sciences, 16, 51-68, 2018.

Bhaumik, R., Gowins, J., Jacobs, R., Jenkins, L., Barba, A., Bhaumik, D. K., Lange- necker, S. A. “Multivariate Pattern Analysis Strategies in Detection of Remitted Major Depressive Disorder using Resting State Functional Connectivity.” Neuroimage-Clinical, 16, 390-398, 2016

Bhaumik, D.K., Roy, A., Lazar, N., Kapur, K., Aryal, S., Sweeney, J.A., Patterson, D., and Gibbons, R. D. “Hypothesis Testing, Power and Sample Size Determination for Between Group Comparisons in fMRI Experiments.” Statistical Methodology, 6, 133-149, 2009.

Kapur, K., Roy, A., Bhaumik, D.K., Gibbons, R., Lazar, N., Sweeney, J., Aryal, S., and Patterson, D. “Estimation and classification of BOLD responses over multiple tri- als.” Communication in Statistics, 38, 3099-3113, 2009.

Gibbons, R.D., Lazar, N., Bhaumik, D.K., Sclove, S. N., Chen, H.Y., Thulborn, K.R., Sweeney, J.A., Patterson, D. “Estimation and Classification of fMRI Hemodynamic Re- sponse Patterns.” NeuroImage, 22, 804-814, 2004.

Bhaumik, D. K., Jie, F., Nordgren, Bhaumik, R., and Bikas K. Sinha, B.K. “A mixed-effects model for detecting disrupted connectivities in heterogeneous data’.’ IEEE, Transactions in Medical Imaging, 2018 (in print).

Bhaumik, R., Pradhan A., Das, S., Bhaumik, D. K. “Predicting Autism Spectrum Disorder Using Domain-Adaptive Cross-Site Evaluation.” Neuroinformatics, 2018.

Fei Jie, Rawan A Rupnow, Dulal K Bhaumik, Runa Bhaumik, and Bikas K Sinha. “Analysis of Functional Connectivity Data by Hierarchical Bayesian Models and Ap- plications in Autism Study.” International Journal of Statistical Sciences, 16, 51-68, 2018.